Dataset list

class igua.dataset.list.DatasetList(datasets=())

A dataset consisting in a list of other datasets.

extract_clusters(progress)

Extract the clusters from the dataset.

Parameters:

progress (rich.progress.Progress) – A Progress instance that can be used for tracking progress.

Yields:

Cluster – A cluster object for each gene cluster to be processed in the dataset.

extract_proteins(progress, representatives)

Extracts protein sequences from GenBank files.

Parameters:

• progress (rich.progress.Progress) – A Progress instance that can be used for tracking progress.

• cluster_ids (collections.abc.Collection of str) – A collection of cluster IDs from which to extract proteins.

Yields:

Protein – A protein object for each protein of the gene clusters to be processed in the dataset.